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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_16992861_16993695_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16992861 - 16993695
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTCAGGAACT
Flanking Amino Acid:
YEIMDGAPVKGESIPIRLFL
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.9
0.67
1
79
33.3
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
55.1
0.24
2.4
86.41
39.1

Associated Gene:

Gene:
VPS26A
Ensembl Gene ID:
ENSAPLG00000012577
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013104
16984820 - 16994860
10041