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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17004323_17004858_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17004323 - 17004858
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTGCTTTAATT
Flanking Amino Acid:
LMYTTGEEVEVRNYERLTPL
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
72.5
0.51
0.9
63.5
41.9
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
69.3
0.68
1.3
77.48
40

Associated Gene:

Gene:
SUPV3L1
Ensembl Gene ID:
ENSAPLG00000012258
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048464
16995774 - 17011856
16083
ENSAPLT00000012809
16996652 - 17012148
15497