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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17006880_17007242_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17006880 - 17007242
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATGGAAAA
Flanking Amino Acid:
ILSEPVRPVKAAGLHPTAEQ
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
40.1
-0.7
2.1
53.9
37.8

Associated Gene:

Gene:
SUPV3L1
Ensembl Gene ID:
ENSAPLG00000012258
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048464
16995774 - 17011856
16083
ENSAPLT00000012809
16996652 - 17012148
15497