Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17007324_17008802_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17007324 - 17008802

Intron Length:

1479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGAGCA

5'SS Class:

major

3'SS Sequence:

TATGTTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

CTTCATTTGATT

Flanking Amino Acid:

LPDATLSNLIDIFVSLSQVD

Intron Amino Acid Position:

522

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

63.5

34.6

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

81.5

0.71

0.9

76.1

37.6

Minor 5ss

33.3

-1.9

3.4

45.7

43.4

Minor BPS

56.5

0.29

1.5

73.05

38.3

Associated Gene:

Gene:

SUPV3L1

Ensembl Gene ID:

ENSAPLG00000012258

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048464

16995774 - 17011856

16083

ENSAPLT00000012809

16996652 - 17012148

15497