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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17016890_17019559_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17016890 - 17019559
Intron Length:
2670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CGCACGTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAC
U12 Branch Point Sequence:
TCCCTCGTGACA
Flanking Amino Acid:
TKLKEDQIKKVDRYLYHMRL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
58.8
0.22
1.3
51
44.3
Major PPT
64.8
0.33
1
53.5
41.4
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
47.6
-0.1
2
58.76
41.4

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885