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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17021969_17022059_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17021969 - 17022059
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCCAT
5'SS Class:
major
3'SS Sequence:
CTTTCTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAA
U12 Branch Point Sequence:
AAAGCCTGACCC
Flanking Amino Acid:
KEVIQGSGTELFNYVADCLL
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
68.8
43.8
Major BPS
60.5
0.26
1.3
63.4
44.3
Major PPT
82
0.72
0.7
77.2
24.8
Minor 5ss
38.1
-1.3
3.4
55.3
48.9
Minor BPS
47.6
-0.2
1.8
55.99
41.8

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885