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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17022180_17022664_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17022180 - 17022664
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TGATCTTTTACT
Flanking Amino Acid:
FPCKQTKLEEGALLAWTKHF
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
74.2
0.6
1
67
39.4
Major PPT
89.3
0.88
0.7
81.3
36
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
68.4
0.66
1.6
81.68
39.5

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885