Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17022761_17023682_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17022761 - 17023682

Intron Length:

922

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CTCATGCTATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TTTTCCCTATTA

Flanking Amino Acid:

SLRKALQKHKDIDVDVLAMV

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.6

1.15

0.7

90.9

28.7

Major BPS

81.9

0.79

0.8

81.9

Major PPT

64.4

0.33

0.9

62.7

38.3

Minor 5ss

35.8

-1.6

4.1

57.8

46.8

Minor BPS

63.3

0.41

1.9

80.12

Associated Gene:

Gene:

HKDC1

Ensembl Gene ID:

ENSAPLG00000011408

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011966

17016698 - 17032582

15885