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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17024594_17024881_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17024594 - 17024881
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTCTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACACCTGTAATC
Flanking Amino Acid:
DLGSLNPGKQLFEKMISSLY
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.1
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.4
0.73
0.8
73.8
35.4
Minor 5ss
36.9
-1.5
3.4
55
43.6
Minor BPS
47.3
-0.2
1.9
54.52
37.9

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885