About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17025038_17025768_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17025038 - 17025768
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
TGTTTTGGGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTAGGT
Flanking Amino Acid:
IEMKHVCAMEKYKEGLSNTK
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
33.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
63.5
0.3
1.1
61.8
44.4
Minor 5ss
33.4
-1.9
3.4
43.5
37.7
Minor BPS
49.5
0.04
2.2
76.99
45.3

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885