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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17026779_17027068_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17026779 - 17027068
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
CTTCTCTTACAG
Flanking Amino Acid:
TYVCGTPDGTESGKFLALDL
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
83.1
0.75
0.8
76.6
31.4
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
49.4
-0.1
1.8
57.38
44.1

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885