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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17027218_17027306_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17027218 - 17027306
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGATTTTCATGC
Flanking Amino Acid:
LEIMQGTGEELFDHIVQCIA
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.7
81.2
36.5
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
41.1
-0.7
1.8
45.9
36.7

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885