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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17027427_17028461_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17027427 - 17028461
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
FPCRQASIDKGTLVGWTKGF
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885