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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17028558_17028647_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17028558 - 17028647
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
ACTTATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGTGACTTATGT
Flanking Amino Acid:
MLREAIRRRNEFDLDIVAVV
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
67.8
39.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
73
0.52
0.9
69.9
40.6
Minor 5ss
42.6
-0.8
3.1
60
44.9
Minor BPS
47.5
-0.1
2.1
69.49
46.9

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885