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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17029783_17030187_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17029783 - 17030187
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACGGG
5'SS Class:
major
3'SS Sequence:
TATAACACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTTTTATAACA
Flanking Amino Acid:
DEGSLNAGKQRYEKMTSGMY
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
60.4
44.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
60.3
0.23
1
52.9
40.8
Minor 5ss
35.1
-1.7
3.4
46.8
48.5
Minor BPS
65.3
0.48
1.6
75.35
36.3

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885