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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17030344_17031037_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17030344 - 17031037
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTTGCCTTTACG
Flanking Amino Acid:
FETKFLSQIESDRLALLQVR
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
73.1
0.52
0.9
68.8
36.1
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
68.2
0.43
1.8
75.67
42.1

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885