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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17031272_17031909_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17031272 - 17031909
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GACTTCTAAAAT
Flanking Amino Acid:
VDGTLYKLHPHFSRVLQETV
Intron Amino Acid Position:
870

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.1
0.84
0.7
84.7
23
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
51.7
0.13
1.8
66.65
43.7

Associated Gene:

Gene:
HKDC1
Ensembl Gene ID:
ENSAPLG00000011408
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011966
17016698 - 17032582
15885