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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17041406_17052130_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17041406 - 17052130
Intron Length:
10725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TCCTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TAGCCTTTCACC
Flanking Amino Acid:
PGYCCSPLCPIDKYLYAMRL
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80
0.68
0.7
72.7
32.1
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
55.5
0.16
1.8
64.74
40.9

Associated Gene:

Gene:
HK1
Ensembl Gene ID:
ENSAPLG00000009913
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010438
17041319 - 17077481
36163