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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17069330_17069430_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17069330 - 17069430
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TTCTCTTTAAAG
Flanking Amino Acid:
IEVMQGTGEELFDHIVTCIS
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
81
0.7
1
82.3
26.9
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
71.5
0.54
1.4
72.3
40.7

Associated Gene:

Gene:
HK1
Ensembl Gene ID:
ENSAPLG00000009913
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042364
17047517 - 17077508
29992
ENSAPLT00000010438
17041319 - 17077481
36163