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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17073629_17075650_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17073629 - 17075650
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGG
5'SS Class:
major
3'SS Sequence:
TCTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
DDFSLNAGKQRYEKMISGMY
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
54.3
45.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.7
0.83
0.7
81.6
28.7
Minor 5ss
35.1
-1.7
3.4
47.5
47.9
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
HK1
Ensembl Gene ID:
ENSAPLG00000009913
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042364
17047517 - 17077508
29992
ENSAPLT00000010438
17041319 - 17077481
36163