About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17075807_17076431_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17075807 - 17076431
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTGAACTGAACT
Flanking Amino Acid:
FETKFLSQIESDRLALLQVR
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
79.8
0.67
0.8
73.5
31.5
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
60.8
0.42
1.7
79.19
42.2

Associated Gene:

Gene:
HK1
Ensembl Gene ID:
ENSAPLG00000009913
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042364
17047517 - 17077508
29992
ENSAPLT00000010438
17041319 - 17077481
36163