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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17091661_17091788_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

17091661 - 17091788

Intron Length:

128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAT

U12 Branch Point Sequence:

GAAGAGTTAATC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

71.7

33.5

Major BPS

75.6

0.64

1.1

75.7

36.5

Major PPT

84.2

0.77

0.8

81.3

36.4

Minor 5ss

27.9

-2.5

3.5

37.1

47.5

Minor BPS

43.5

-0.5

2.2

50.14

40.2

Associated Gene:

Gene:

TACR2

Ensembl Gene ID:

ENSAPLG00000013012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013556

17083071 - 17092206

9136