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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17099347_17101780_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17099347 - 17101780
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTCTGCCTAAGA
Flanking Amino Acid:
LRDNLCLLQAFMYILGLCLL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79
0.65
0.8
73
32
Minor 5ss
29.4
-2.4
3.2
40.9
45.4
Minor BPS
48.2
-0.1
2.3
67.55
44.9

Associated Gene:

Gene:
TSPAN15
Ensembl Gene ID:
ENSAPLG00000012804
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013352
17095205 - 17108495
13291