About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17101856_17103471_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17101856 - 17103471
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TTGTGTTTACTT
Flanking Amino Acid:
GVVALIFRNQTIKFLNDNIR
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
86.4
0.82
0.8
77.7
36.7
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
53.3
0.18
2
74.76
43.2

Associated Gene:

Gene:
TSPAN15
Ensembl Gene ID:
ENSAPLG00000012804
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013352
17095205 - 17108495
13291