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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17103568_17105572_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17103568 - 17105572
Intron Length:
2005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTCTTT
5'SS Class:
weak_major
3'SS Sequence:
GTCGTTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTCCTTTGTCT
Flanking Amino Acid:
KNIMDSVQKQFKCCGGEDYR
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
65.4
40.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.6
0.6
0.9
68.4
42.1
Minor 5ss
58.1
0.27
2.3
74.5
41.6
Minor BPS
48.2
-0
3.5
84.49
36.3

Associated Gene:

Gene:
TSPAN15
Ensembl Gene ID:
ENSAPLG00000012804
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013352
17095205 - 17108495
13291