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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17105690_17108315_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17105690 - 17108315
Intron Length:
2626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGTACTTAAATT
Flanking Amino Acid:
VPYTCCVTNKTDIINTMCGY
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
60.7
0.41
1.7
77.11
39.8

Associated Gene:

Gene:
TSPAN15
Ensembl Gene ID:
ENSAPLG00000012804
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013352
17095205 - 17108495
13291