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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17191811_17191911_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17191811 - 17191911
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
KGAAGPRGQPGPPGQKGEKG
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
COL13A1
Ensembl Gene ID:
ENSAPLG00000012044
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038255
17190733 - 17219365
28633
ENSAPLT00000012619
17190733 - 17219365
28633