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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17191939_17192205_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17191939 - 17192205

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTTTA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCCTTTTAATC

Flanking Amino Acid:

PGPPGQKGEKGQCAEYPHRL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.8

0.76

0.7

79.4

25.9

Minor 5ss

43.8

-0.7

2.8

58.6

45.8

Minor BPS

67.3

0.52

1.2

70.66

35.2

Associated Gene:

Gene:

COL13A1

Ensembl Gene ID:

ENSAPLG00000012044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038255

17190733 - 17219365

28633

ENSAPLT00000012619

17190733 - 17219365

28633