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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17199585_17200427_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17199585 - 17200427

Intron Length:

843

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTACC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTACCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TCTGCTTTGATT

Flanking Amino Acid:

EPGKPGRDGKGLPGPPGPKG

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.9

35.3

Major BPS

0.85

0.9

39.9

Major PPT

81.5

0.71

0.8

74.6

34.7

Minor 5ss

30.2

-2.3

2.9

36.9

40.4

Minor BPS

66.6

0.6

1.3

78.01

39.5

Associated Gene:

Gene:

COL13A1

Ensembl Gene ID:

ENSAPLG00000012044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038255

17190733 - 17219365

28633

ENSAPLT00000012619

17190733 - 17219365

28633