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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17201232_17202430_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17201232 - 17202430
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTGTTTCATCT
Flanking Amino Acid:
PGIQGYPGRKGEAGMAGLPG
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
47.6
-0.1
1.9
66.8
44.7

Associated Gene:

Gene:
COL13A1
Ensembl Gene ID:
ENSAPLG00000012044
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038255
17190733 - 17219365
28633
ENSAPLT00000012619
17190733 - 17219365
28633