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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17203082_17207233_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17203082 - 17207233
Intron Length:
4152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TGTTTCTTGCTC
Flanking Amino Acid:
KGEKGDAGIKGERGMPGLPG
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
75.3
0.57
0.9
65.1
41.2
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
45.6
-0.3
3.4
69.44
36.6

Associated Gene:

Gene:
COL13A1
Ensembl Gene ID:
ENSAPLG00000012044
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012619
17190733 - 17219365
28633