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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17203082_17208888_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17203082 - 17208888
Intron Length:
5807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCATTTAAACA
Flanking Amino Acid:
KGEKGDAGIKGAPGLAAAGM
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.6
0.64
0.9
75.5
33.1
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
55.4
0.17
1.7
66.81
40.3

Associated Gene:

Gene:
COL13A1
Ensembl Gene ID:
ENSAPLG00000012044
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038255
17190733 - 17219365
28633