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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17207279_17208888_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17207279 - 17208888
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTGT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCATTTAAACA
Flanking Amino Acid:
PGLPGRHGMKGAPGLAAAGM
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
69.9
43.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.6
0.64
0.9
75.5
33.1
Minor 5ss
46.4
-0.4
2.9
67.9
42.9
Minor BPS
55.4
0.17
1.7
66.81
40.3

Associated Gene:

Gene:
COL13A1
Ensembl Gene ID:
ENSAPLG00000012044
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012619
17190733 - 17219365
28633