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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17213139_17213824_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17213139 - 17213824

Intron Length:

686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGAGG

5'SS Class:

major

3'SS Sequence:

GTTCTTGTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TTCTTGTTACAG

Flanking Amino Acid:

VGAAGPQGEKGEPGTPGEQG

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

64.5

46.9

Major BPS

66.3

0.4

1.1

41.8

Major PPT

0.72

0.9

75.8

38.2

Minor 5ss

30.6

-2.2

3.3

39.8

45.8

Minor BPS

44.7

-0.5

2.3

55.39

46.1

Associated Gene:

Gene:

COL13A1

Ensembl Gene ID:

ENSAPLG00000012044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038255

17190733 - 17219365

28633

ENSAPLT00000012619

17190733 - 17219365

28633