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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17215044_17215928_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17215044 - 17215928

Intron Length:

885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTGTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

ATATTTTGAAAA

Flanking Amino Acid:

LQEIRTLALMGPPGLPGVAG

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

73.7

31.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

82.3

0.73

0.8

77.1

37.1

Minor 5ss

36.2

-1.6

2.8

41.9

38.9

Minor BPS

54.8

0.15

1.5

64.58

Associated Gene:

Gene:

COL13A1

Ensembl Gene ID:

ENSAPLG00000012044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038255

17190733 - 17219365

28633

ENSAPLT00000012619

17190733 - 17219365

28633