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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17216530_17216857_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17216530 - 17216857

Intron Length:

328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACAA

5'SS Class:

strong_major

3'SS Sequence:

GCGTTTCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTATCTACACT

Flanking Amino Acid:

PGPPGHDGEKGPRGKPGEMG

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

76.9

33.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

75.9

0.58

0.9

73.5

37.1

Minor 5ss

31.3

-2.1

38.6

46.4

Minor BPS

53.2

0.18

2.1

79.88

42.3

Associated Gene:

Gene:

COL13A1

Ensembl Gene ID:

ENSAPLG00000012044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012619

17190733 - 17219365

28633

ENSAPLT00000038255

17190733 - 17219365

28633