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Intron Name: Anas_platyrhynchos_platyrhynchos_6_17217011_17217544_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17217011 - 17217544

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGGTCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTTTCAGAAAA

Flanking Amino Acid:

KGEPGQAGSPGLDGPTGEKG

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.9

83.6

29.8

Major BPS

0.65

1.5

85.7

34.9

Major PPT

70.7

0.47

0.9

64.8

36.5

Minor 5ss

35.5

-1.6

2.7

43.1

43.9

Minor BPS

55.7

0.17

1.8

74.6

36.1

Associated Gene:

Gene:

COL13A1

Ensembl Gene ID:

ENSAPLG00000012044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038255

17190733 - 17219365

28633

ENSAPLT00000012619

17190733 - 17219365

28633