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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17267117_17268574_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17267117 - 17268574
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TACCCCAAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TCTACCCCAAAT
Flanking Amino Acid:
KSNKARTPKKNKQKDNEKEG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
54.8
0.11
0.9
53.4
35.2
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
48.5
-0
2
71.56
44.5

Associated Gene:

Gene:
MACROH2A2
Ensembl Gene ID:
ENSAPLG00000011576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012121
17257575 - 17276002
18428