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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17268686_17270332_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17268686 - 17270332
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
CTGTATCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTTTTTACTC
Flanking Amino Acid:
SSKSLVPGQKLSLTQSDISH
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.5
0.66
0.9
73.2
36.9
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
60.1
0.3
1.6
68.66
38.1

Associated Gene:

Gene:
MACROH2A2
Ensembl Gene ID:
ENSAPLG00000011576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012121
17257575 - 17276002
18428