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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17273615_17275836_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17273615 - 17275836
Intron Length:
2222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCCCCTGTCACA
Flanking Amino Acid:
SVAFPPFPSGRNCFPKQTAA
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
62.4
0.28
0.9
56.8
32.5
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
43.9
-0.4
2.3
55.59
44.1

Associated Gene:

Gene:
MACROH2A2
Ensembl Gene ID:
ENSAPLG00000011576
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012121
17257575 - 17276002
18428