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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17279534_17279817_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17279534 - 17279817
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCAGCA
5'SS Class:
major
3'SS Sequence:
TTGTCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGTAT
U12 Branch Point Sequence:
TTGTCCCCAACA
Flanking Amino Acid:
EIKTEHPAKEVTLIHSKIAL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
59.7
39.8
Major BPS
48.6
-0
1.4
49
44.8
Major PPT
72.1
0.5
0.9
67
34.1
Minor 5ss
34.9
-1.7
3.6
48.1
47.6
Minor BPS
61.5
0.36
1.9
76.75
40.1

Associated Gene:

Gene:
AIFM2
Ensembl Gene ID:
ENSAPLG00000029564
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020673
17224890 - 17282051
57162