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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17280349_17281049_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17280349 - 17281049
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAAGGTCTAACA
Flanking Amino Acid:
RQQVLLSDGEELHYSHLILA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.7
0.56
0.8
65.5
36.1
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
43.6
-0.4
2
52.32
39.5

Associated Gene:

Gene:
AIFM2
Ensembl Gene ID:
ENSAPLG00000029564
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020673
17224890 - 17282051
57162