About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17281166_17281729_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17281166 - 17281729
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
CCCCCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTTCCTAACCA
Flanking Amino Acid:
VAALRASVESGFARKTFISY
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
65.5
0.35
0.9
56.3
33.5
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
61
0.34
2
74.7
43.3

Associated Gene:

Gene:
AIFM2
Ensembl Gene ID:
ENSAPLG00000029564
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020673
17224890 - 17282051
57162