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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17287786_17287960_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17287786 - 17287960
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TGCTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
GTGTCCTCAGCC
Flanking Amino Acid:
IIEKENNFISRVSDKLKQSP
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
76.3
0.59
0.9
69.6
36.8
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
56.7
0.19
1.8
67.79
43.4

Associated Gene:

Gene:
CHST3
Ensembl Gene ID:
ENSAPLG00000019849
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029517
17286537 - 17288243
1707