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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17305439_17305523_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17305439 - 17305523
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TGCAAGGTAACT
Flanking Amino Acid:
KDARGCCCAGEVKY
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.1
77.9
38.6
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
89.9
0.9
0.7
89
28.1
Minor 5ss
40.6
-1
2.6
50.6
45.9
Minor BPS
40.7
-0.6
2.6
62.23
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017986
17305175 - 17312691
7517