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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17307098_17308653_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17307098 - 17308653
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTGCT
5'SS Class:
major
3'SS Sequence:
CTCTCTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGCAACTGAACG
Flanking Amino Acid:
PTRLALKLYSAVASPVVWQK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
72.7
36.5
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
78.2
0.64
0.9
75.8
32.7
Minor 5ss
31.8
-2.1
3.1
40.5
39.3
Minor BPS
49.1
-0.2
1.8
55.31
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029607
17306894 - 17312691
5798