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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17308788_17309831_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17308788 - 17309831
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTGCAAGTAACA
Flanking Amino Acid:
QQNVWNKPTVNSIPCDLCKE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
76.5
0.6
0.7
69.6
31.1
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
45
-0.3
2.3
63.23
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039185
17281534 - 17317204
35671
ENSAPLT00000029607
17306894 - 17312691
5798
ENSAPLT00000017986
17305175 - 17312691
7517
ENSAPLT00000017757
17281534 - 17317216
35683