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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17309907_17311076_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17309907 - 17311076
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTGATATAT
Flanking Amino Acid:
GKVLKDNGTEDEIRSYLEKT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70.2
0.45
1
70
36.6
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
41.5
-0.5
2.4
65.31
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017757
17281534 - 17317216
35683
ENSAPLT00000039185
17281534 - 17317204
35671
ENSAPLT00000029607
17306894 - 17312691
5798
ENSAPLT00000017986
17305175 - 17312691
7517