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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17311203_17311463_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17311203 - 17311463
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATGTATCT
Flanking Amino Acid:
VIMDMVKEEFDKPEVVCSAL
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.7
81.1
24.1
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
47.5
-0.1
2.3
74.99
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017757
17281534 - 17317216
35683
ENSAPLT00000039185
17281534 - 17317204
35671
ENSAPLT00000029607
17306894 - 17312691
5798
ENSAPLT00000017986
17305175 - 17312691
7517