About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17311659_17312526_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17311659 - 17312526
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTCTTTTCACT
Flanking Amino Acid:
PQDKPKQKSKGNGDVCQDCI
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.2
0.5
0.9
64.9
40.7
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
59.8
0.39
1.7
79.06
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028226
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029607
17306894 - 17312691
5798
ENSAPLT00000017986
17305175 - 17312691
7517
ENSAPLT00000017757
17281534 - 17317216
35683
ENSAPLT00000039185
17281534 - 17317204
35671